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Android 5.0 addresses this to a degree and once again allows SD card write access to third party apps, albeit in a rather convoluted way. The user must grant an app access to a particular area of storage using a folder chooser dialog which is presented via the Android OS. I'll take you through those steps in relation to WiFi File Explorer so that you can once again manage the SD card using the app. Remember though, this only applies to devices running Android 5.0+ and the latest version of WiFi File Explorer; it will not fix the issue on Android 4.4 devices.